基于共现网络分析和预测白化病共表型的研究

Analysis and prediction of albinism co-phenotypes based on co-occurrence network

  • 摘要:
    目的 分析白化病表型特征及其关联性。
    方法 从PubMed数据库中获取2023年6月10日前白化病相关研究文献,从其摘要文本中抽取表型实体,构建表型共现网络。采用GePhi和VOSviewer软件分析网络的整体特征和表型聚类情况。采用Apriori算法挖掘表型间的关联规则。使用AA指数进行链路预测,预测可能的白化病表型组合。
    结果 白化病表型共现网络具有小世界特性,眼球震颤、皮肤色素减退和视网膜中央凹发育不良是其主要表型。白化病表型异常主要分为5大类,包括视觉系统异常、免疫系统异常、皮肤和毛发系统异常、神经系统异常、呼吸和消化系统异常。多种眼部异常均与眼球震颤共现。白化病可能出现的异常表型组合包括肺炎与皮肤色素减退、视网膜中央凹发育不良和视神经萎缩等表型组合。
    结论 预测并分析白化病的表型特征及表型间的关联规律,以及白化病患者可能出现的表型共现情况,可为确定白化病的研究方向及识别、诊断、预判白化病的发展提供有效参考。

     

    Abstract:
    Objective To analyze the phenotypic characteristics of albinism and their correlations.
    Methods Literatures related to albinism in PubMed database before June 10, 2023 were obtained, and phenotypic entities were extracted from their abstract texts to construct a phenotypic co-occurrence network. GePhi and VOSviewer software were used to analyze the overall characteristics and phenotypic clustering of the network. The Apriori algorithm was used to mine the association rules between phenotypes. The AA index was used for link prediction, predicting possible combinations of albino phenotypes.
    Results The phenotypic co-occurrence network of albinism had a small-world characteristic, and nystagmus, hypopigmentation of skin and foveal dysplasia of retina were the main phenotypes. Phenotypic abnormalities of albinism were mainly divided into five categories, including visual system abnormalities, immune system abnormalities, skin and hair system abnormalities, nervous system abnormalities, and respiratory as well as digestive system abnormalities. A variety of ocular abnormalities were associated with nystagmus. The combination of abnormal phenotypes that may occur in albinism included pneumonia with hypopigmentation of the skin, foveal dysplasia of the retina and atrophy of the optic nerve.
    Conclusion Predicting and analyzing the phenotypic characteristics of albinism and the associative patterns among phenotypes, as well as the potential co-occurrence of phenotypes in albinism patients can provide valuable references for identifying research directions for albinism and for the recognition, diagnosis, and prediction of albinism development.

     

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