基于TCGA数据库分析AHSA1表达与肝细胞癌预后的相关性

Correlation between AHSA1 expression and prognosis of hepatocellular carcinoma based on TCGA database analysis

  • 摘要:
      目的  探讨热休克90 kDa蛋白ATPase同源物1的激活因子(AHSA1)在肝细胞癌(HCC)中的表达,分析AHSA1表达水平与预后的关系。
      方法  利用HCCDB、GEPIA和Oncomine数据库分析AHSA1 mRNA在HCC组织及正常肝组织中的表达情况。从癌症基因组图谱(TCGA)下载HCC RNA-seq表达和临床信息,使用单变量、多变量Cox比例风险回归模型以及Kaplan-Meier图来评估AHSA1预测肝癌预后的价值。利用R软件构建基于AHSA1表达水平的列线图,绘制校准曲线评估实际生存和预测生存的一致性。通过基因本体论(GO)、京都基因和基因组百科全书(KEGG)基因集富集分析揭示与AHSA1相关的肿瘤相关生物学过程。通过TIMER2.0及GFPIA数据库分析HCC中AHSA1的表达与肿瘤免疫浸润的相关性。通过CMAP筛选出作用于AHSA1的小分子靶向药物。
      结果  HCC组织中AHSA1的表达水平高于正常组织,差异有统计学意义(P < 0.01)。AHSA1高表达与HCC预后较差有相关性(P < 0.05), AHSA1高表达是影响HCC患者总体生存期(OS)的独立因素(HR=1.970, P < 0.001)。列线图显示AHSA1基因表达与HCC风险存在相关性,其预测1、3、5年OS的曲线下面积(AUC)分别为0.721、0.711、0.725。校准图显示预测生存率曲线与实际生存率曲线具有较好的一致性。GO和KEGG富集分析显示, AHSA1可以通过介导中性粒细胞活化参与糖酵解、糖异生等生物学过程来促进肿瘤的进展。AHSA1 mRNA表达水平与B细胞、CD4+T细胞、调节性T细胞、巨噬细胞、中性粒细胞和树突状细胞的免疫浸润程度有相关性(P < 0.05)。依他尼酸和布雷他汀可能是逆转AHSA1基因表达的小分子靶向药物。
      结论  AHSA1 mRNA可能是HCC潜在的致癌基因, AHSA1 mRNA高水平表达可能促进HCC组织中免疫浸润,并且与HCC患者预后不良相关。

     

    Abstract:
      Objective  To investigate the expression of activator of heat shock 90 kDa protein ATPase homolog 1 (AHSA1) in hepatocellular carcinoma (HCC) and analyze the relationship between AHSA1 expression level and prognosis.
      Methods  HCCDB, GEPIA and Oncomine databases were used to analyze the expression of AHSA1 mRNA in HCC and normal liver tissues. HCC RNA-seq expression and clinical information were downloaded from the Cancer Genome Atlas (TCGA), and univariate and multivariate Cox proportional hazards regression models and Kaplan-Meier plots were used to evaluate the value of AHSA1 in predicting the prognosis of liver cancer. R software was used to construct the nomogram based on the expression level of AHSA1, and the calibration curve was plotted to evaluate the consistency between the actual survival and the predicted survival. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) gene set enrichment analyses were perform to reveal tumor-associated biological processes related to AHSA1. The TIMER2.0 and GFPIA database were used to evaluate the correlation between AHSAl and tumor immune infiltration in HCC. Small molecule targeted drugs acting on AHSA1 were screened by CMAP.
      Results  The expression level of AHSA1 in HCC tissues was significantly higher than that in normal tissues (P < 0.01). High expression of AHSA1 was associated with the poor prognosis of HCC (P < 0.05), and was an independent factor affecting overall survival (OS) (HR=1.970, P < 0.001). The nomogram showed that AHSA1 gene expression was correlated with the risk of HCC, and the area under the curve (AUC) of predicting OS at 1 year, 3 and 5 years were 0.721, 0.711 and 0.725, respectively. The calibration chart showed that the predicted survival rate curve was in good agreement with the actual survival rate curve. GO and KEGG enrichment analysis showed that AHSAl was able to promote tumor progression by mediating neutrophil activation and participating in biological processes such as glycolysis and gluconeogenesis. The expression level of AHSA1 mRNA was associated with the degrees of immune infiltration by B cells, CD4+ T cells, regulatory T cells, macrophages, neutrophils and dendritic cells (P < 0.05). Etacrynic acid and blebbistatin might be the small molecule targeted drugs that can reverse the expression of AHSA1.
      Conclusion  AHSA1 mRNA may be a potential oncogene in HCC, the high expression of AHSA1 mRNA may promote the immune infiltration of HCC tissues, and is associated with poor prognosis of HCC patients.

     

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